Difference between revisions of "Soybean"
From Applied Bioinformatics Group
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=== Soybean cqProt003 supplementary data === | === Soybean cqProt003 supplementary data === | ||
| − | |||
| − | |||
| − | + | 1. Raw InDels | |
| + | 2. Raw SNPs | ||
| + | 3. Filtered Insertions reformatted to biallelic | ||
| + | 4. Filtered Deletions reformatted to biallelic | ||
| + | 5. HaplotypeMiner inputs | ||
| + | 6. Filtered SNPs | ||
| − | |||
| − | + | This is the supplementary data for Marsh et al. | |
| + | Files contain Gm20 with Wm82.a1.v4 reference | ||
| − | [http://appliedbioinformatics.com.au/download/ | + | [http://appliedbioinformatics.com.au/download/Gm20.INDELs.vcf.gz Raw Indels] |
| − | [http://appliedbioinformatics.com.au/download/protein_Gm20.SNPs.id.biallic_maf_0.01_geno_0.1.vcf.gz | + | [http://appliedbioinformatics.com.au/download/Gm20.SNPs.vcf.gz Raw SNPs] |
| + | |||
| + | [http://appliedbioinformatics.com.au/download/filtered_biallelic_Gm20.INs.vcf.gz Filtered Insertions reformatted to biallelic] | ||
| + | |||
| + | [http://appliedbioinformatics.com.au/download/filtered_biallelic_Gm20.DELs.vcf.gz Filtered Deletions reformatted to biallelic] | ||
| + | |||
| + | [http://appliedbioinformatics.com.au/download/HM_input.tar.gz HaplotypeMiner input] | ||
| + | |||
| + | [http://appliedbioinformatics.com.au/download/protein_Gm20.SNPs.id.biallic_maf_0.01_geno_0.1.vcf.gz Filtered SNPs] | ||
=== Soybean pangenome === | === Soybean pangenome === | ||
Revision as of 10:13, 8 October 2021
Soybean genomics
Soybean cqProt003 supplementary data
1. Raw InDels 2. Raw SNPs 3. Filtered Insertions reformatted to biallelic 4. Filtered Deletions reformatted to biallelic 5. HaplotypeMiner inputs 6. Filtered SNPs
This is the supplementary data for Marsh et al.
Files contain Gm20 with Wm82.a1.v4 reference
Filtered Insertions reformatted to biallelic
Filtered Deletions reformatted to biallelic
Soybean pangenome
Supplementary information relating to Bayer et al. 2021, Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding, is available below.
Supplementary Tables: Download here
The data can also be viewed on soybase and UWA Research Repository.
