Difference between revisions of "Seagrass Zmu Genome"

From Applied Bioinformatics Group
Jump to: navigation, search
 
(9 intermediate revisions by 2 users not shown)
Line 1: Line 1:
 
This page provides access to ''Zostera muelleri'' genome assembly and annotation data for the paper Lee et al. 2016.
 
This page provides access to ''Zostera muelleri'' genome assembly and annotation data for the paper Lee et al. 2016.
 +
http://www.plantphysiol.org/content/172/1/272.full.pdf+html
 +
 +
Data DOI: 10.4225/23/5ad41a6c77b60
 +
 +
Full records of data is viewable and downloadable here: http://research-repository.uwa.edu.au/en/datasets/zostera-muelleri-seagrass-genome-data(83e77b30-9044-4012-b9c7-b0b97827c989).html 
 +
 +
OR as below
  
  
 
The draft assembly can be downloaded from:
 
The draft assembly can be downloaded from:
  
::[http://appliedbioinformatics.com.au/download/Zmu_assembly.fa.tar.gz Scaffolds]
+
:[http://appliedbioinformatics.com.au/download/Zmu_v1_scaffolds.fa.tar.gz Scaffolds]
  
 +
The predicted genes in proteins, transcripts and CDS can be downloaded from:
  
The predicted genes in proteins, transcripts and CDS can be downloaded from:
+
:[http://appliedbioinformatics.com.au/download/Zmu_v1_protein.fa.tar.gz Proteins]
 +
 
 +
:[http://appliedbioinformatics.com.au/download/Zmu_v1_transcript.fa.tar.gz Transcripts]
 +
 
 +
:[http://appliedbioinformatics.com.au/download/Zmu_v1_cds.fa.tar.gz CDS]
  
::[http://appliedbioinformatics.com.au/download/Zmu_protein.fa.tar.gz Proteins]
+
The gene models reported by MAKER in the format of gff can be downloaded from:
 +
:[http://appliedbioinformatics.com.au/download/Zmu_v1_maker.gff.tar.gz Gene_models]
  
::[http://appliedbioinformatics.com.au/download/Zmu_transcript.fa.tar.gz Transcripts]
+
The domains annotation of predicted proteins in the format of gff can be downloaded from:
 +
:[http://appliedbioinformatics.com.au/download/Zmu_v1_interproscan_of_proteins.gff.tar.gz Domains_annotation]
  
::[http://appliedbioinformatics.com.au/download/Zmu_cds.fa.tar.gz CDS]
+
The tab-deliminated text file for orthologous groups between five species can be downloaded from:  
 +
:[http://appliedbioinformatics.com.au/download/Zmu_v1_orthomclgroups.txt.tar.gz Orthogroups]

Latest revision as of 03:49, 16 April 2018

This page provides access to Zostera muelleri genome assembly and annotation data for the paper Lee et al. 2016. http://www.plantphysiol.org/content/172/1/272.full.pdf+html

Data DOI: 10.4225/23/5ad41a6c77b60

Full records of data is viewable and downloadable here: http://research-repository.uwa.edu.au/en/datasets/zostera-muelleri-seagrass-genome-data(83e77b30-9044-4012-b9c7-b0b97827c989).html

OR as below


The draft assembly can be downloaded from:

Scaffolds

The predicted genes in proteins, transcripts and CDS can be downloaded from:

Proteins
Transcripts
CDS

The gene models reported by MAKER in the format of gff can be downloaded from:

Gene_models

The domains annotation of predicted proteins in the format of gff can be downloaded from:

Domains_annotation

The tab-deliminated text file for orthologous groups between five species can be downloaded from:

Orthogroups