Publications DE - Revision history

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2017-05-08T07:26:59Z

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2017-03-25T15:59:51Z

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2017-03-19T02:08:51Z

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2017-03-19T02:06:04Z

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2017-03-01T09:19:06Z

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2016-12-31T06:14:06Z

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2016-12-31T06:13:08Z

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2016-12-31T06:11:31Z

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2016-02-08T04:37:42Z

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2016-02-08T04:35:23Z

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 # Scheben A and Edwards D. (2017) Genome editors take on crops. [http://science.sciencemag.org/cgi/content/full/355/6330/1122?ijkey=9f1N4UfAGisKg&keytype=ref&siteid=sci Science 355 (6330): 1122-1123]
 # Montenegro JDM, Golicz AA, Bayer PE, Hurgobin B, Lee HT, Chan CKK, Visendi P, Lai K, Doležel J, Batley J, Edwards D. (2017) The pangenome of modern hexaploid bread wheat. Plant Journal. (accepted February 2017)
-# Hurgobin H and Edwards D. (2017) SNP discovery using a pangenome: has the single reference approach become obsolete? Biology (accepted March 2017)
+# Hurgobin B and Edwards D. (2017) SNP discovery using a pangenome: has the single reference approach become obsolete? Biology (accepted March 2017)
 # Li Y, Ruperao P, Batley J, Edwards D, Davidson J, Hobson K, Sutton T. (2017) Genome analysis identified novel candidate genes for ascochyta blight resistance in chickpea using whole genome re-sequencing data. Frontiers in Plant Science (accepted March 2017)
 # Yuan Y, Bayer PE, Batley J and Edwards D. (2017) Improvements in genomic technologies: application to crop genomics. Trends in Biotechnology. (accepted January 2017)

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 ===JOURNAL ARTICLES:===
-# Scheben A and Edwards D. (2017) Genome editors take on crops. [http://science.sciencemag.org/content/355/6330/1122 Science 355 (6330): 1122-1123]
+# Scheben A and Edwards D. (2017) Genome editors take on crops. [http://science.sciencemag.org/cgi/content/full/355/6330/1122?ijkey=9f1N4UfAGisKg&keytype=ref&siteid=sci Science 355 (6330): 1122-1123]
 # Montenegro JDM, Golicz AA, Bayer PE, Hurgobin B, Lee HT, Chan CKK, Visendi P, Lai K, Doležel J, Batley J, Edwards D. (2017) The pangenome of modern hexaploid bread wheat. Plant Journal. (accepted February 2017)
 # Hurgobin H and Edwards D. (2017) SNP discovery using a pangenome: has the single reference approach become obsolete? Biology (accepted March 2017)

@@ Line 45: / Line 45: @@
 # Scheben A and Edwards D. (2017) Genome editors take on crops. [http://science.sciencemag.org/content/355/6330/1122 Science 355 (6330): 1122-1123]
 # Gacek K, Bayer PE, Bartkowiak-Broda I, Szala L, Bocianowski J, Edwards D and Batley J. (2017) Genome-wide association study of genetic control of seed fatty acid biosynthesis in Brassica napus. Frontiers in Plant Science (accepted December 2016)
 # Golicz AA, Bayer PE, Barker G, Edger PP, Kim HR, Martinez PA, Chan CKK, Severn-Ellis A, McCombie R, Parkin IAP, Paterson AH, Pires JC, Sharpe AG, Tang H, R. Teakle GR, Town CD, Batley J, Edwards D. (2016) The pangenome of an agronomically important crop Brassica oleracea. Nature Communications 7:13390

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 ===JOURNAL ARTICLES:===
 # Gacek K, Bayer PE, Bartkowiak-Broda I, Szala L, Bocianowski J, Edwards D and Batley J. (2017) Genome-wide association study of genetic control of seed fatty acid biosynthesis in Brassica napus. Frontiers in Plant Science (accepted December 2016)
 # Golicz AA, Bayer PE, Barker G, Edger PP, Kim HR, Martinez PA, Chan CKK, Severn-Ellis A, McCombie R, Parkin IAP, Paterson AH, Pires JC, Sharpe AG, Tang H, R. Teakle GR, Town CD, Batley J, Edwards D. (2016) The pangenome of an agronomically important crop Brassica oleracea. Nature Communications 7:13390

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 #Lai K, Lorenc MT and Edwards D. (2015) Molecular marker databases. In: Plant Genotyping. Ed. Batley J. Methods in Molecular Biology, Springer (USA), pp. 49-62
 #Golicz AA, Bayer PE and Edwards D. (2015) Skim-based genotyping by sequencing. In: Plant Genotyping. Ed. Batley J. Methods in Molecular Biology, Springer (USA), pp. 257-270
-#Visendi P, Batley J and Edwards D. Next Generation Sequencing and Germplasm Resources. In Advances in Genomics of Plant Genetic resources. Volume 1. Genomics platforms, crop domestication and allele mining. Ed. Tuberosa R. Springer (USA) (accepted August 2012)
+#Visendi P, Batley J and Edwards D. Next Generation Sequencing and Germplasm Resources. In Advances in Genomics of Plant Genetic resources. Volume 1. Genomics platforms, crop domestication and allele mining. Ed. Tuberosa R. Springer (USA), pp. 369-390
 #Edwards D. (2013) Bioinformatics tools to assist breeding for climate change. In Genomics and breeding for climate resilient crops. Ed, Kole C. Springer (USA), pp 391-414
 #Edwards D and Gupta PK. (2013) Sequence based DNA markers and genotyping for cereal genomics and breeding. In Cereal Genomics II. Eds. Gupta PK and Varshney, RK. Springer (USA) pp 57-76

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 # Kale SM, Jaganathan D, Ruperao P, Chen C, Punna R, Kudapa H, Thudi M, Roorkiwal M, Katta M, Doddamani D, Garg V, Kishor PBK, Gaur PM, Nguyen HT, Batley J, Edwards D, Sutton T and Varshney RK (2015) Prioritization of candidate genes in "QTL-hotspot" region for drought tolerance in chickpea (Cicer arietinum L.). Scientific Reports (accepted September 2015)
 # Abberton M, Batley J, Bentley A, Bryant J, Cai H, Cockram J, Costa de Oliveira A, Cseke L, Dempewolf H, De Pace C, Edwards D, Gepts P , Greenland A, Hall A, Henry R, Hori K, Howe G, Hughes S, Humphreys M, Lightfoot D, Marshall A, Mayes S, Nguyen H, Ogbonnaya F, Ortiz R, Paterson A, Tuberosa R, Valliyodan B, Varshney R, Yano M. (2015) Global agricultural intensification during climate change: a role for genomics. Plant Biotechnology Journal (accepted August 2015)
-# Gou L, Hattori J, Fedak G, Balcerzak M, Klassen D, Sharpe A, Visendi P, Edwards D, Tinker N, Wei Y, Chen G and Ouellet T. (2015) Development and validation of Thinopyrum elongatum expressed molecular markers specific for the long arm of chromosome 7E. Crop Science (accepted July 2015)
+# Gou L, Hattori J, Fedak G, Balcerzak M, Klassen D, Sharpe A, Visendi P, Edwards D, Tinker N, Wei Y, Chen G and Ouellet T. (2015) Development and validation of Thinopyrum elongatum expressed molecular markers specific for the long arm of chromosome 7E. Crop Science Crop Science. 56: 354-364
 # Staňková H, Valárik M, Lapitan NLV, Berkman PJ, Batley J, Edwards D, Luo MC, Tulpová Z, Kubaláková M, Stein N, Doležel J and Šimková H. (2015) Chromosomal genomics facilitates fine mapping of a Russian wheat aphid resistance gene. Theoretical and Applied Genetics. 128 (7): 1373-1383
 # Cai G, Yang Q, Yi B, Fan C, Zhang C, Edwards D, Batley J and Zhou Y. (2015) A bi-filtering method for processing single nucleotide polymorphism array data improves the quality of genetic map and accuracy of quantitative trait locus mapping in doubled haploid populations of polyploid Brassica napus. BMC Genomics 16, 409

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 ===JOURNAL ARTICLES:===
 # Batley J and Edwards D. (2016) The application of genomics and bioinformatics to accelerate crop improvement in a changing climate. Current Opinion in Plant Biology. (accepted February 2016)
 # Visendi P, Berkman PJ, Hayashi S, Golicz AA, Bayer PE, Ruperao P, Hurgobin B, Montenegro J, Kenneth Chan CKK, Staňková H, Batley J, Šimková H, Doležel J and Edwards D. (2016) An efficient approach to BAC based assembly of complex genomes. Plant Methods. 12:2

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 ===BOOK CHAPTERS:===
 #Edwards D. (2015) The impact of genomics technology on adapting plants to climate change. In: Plant Genomics and Climate Change. Eds. Edwards D. and Batley J. Springer (USA), (in press)
 #Ruperao P and Edwards D. (2015) Bioinformatics: Identification of markers from next-generation sequence data. In: Plant Genotyping. Ed. Batley J. Methods in Molecular Biology, Springer (USA), pp. 29-47

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 ===JOURNAL ARTICLES:===
 # Varshney RK, Singh VK, Xun X, Marshall DF, Wang J and Edwards D. (2015) Analytical and decision support tools for genomics-assisted breeding. Trends in Plant Science. (accepted October 2015)
 # Golicz A, Batley J and Edwards D. (2015) Towards plant pangenomics. Plant Biotechnology Journal. (accepted October 2015)

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 # Edwards D, Henry RJ and Edwards KJ. (2012) Advances in DNA sequencing accelerating plant biotechnology. [http://onlinelibrary.wiley.com/doi/10.1111/j.1467-7652.2012.00724.x/full Plant Biotechnology Journal. 10 (6): 621–622]
 # Hayashi S, Reid D, Lorenc M, Stiller J, Edwards D, Gresshoff PM and Ferguson BJ. (2012) Transient Nod-factor dependent gene expression in the nodulation-competent zone of soybean (Glycine max [L.] Merr.) roots. [http://onlinelibrary.wiley.com/doi/10.1111/j.1467-7652.2012.00729.x/abstract Plant Biotechnology Journal. 8: 995–1010]
-# Jiang Q, Yen SH, Stiller J, Edwards D, Scott PT and Gresshoff PM. (2012) Diversity Analysis of the Tree Legume Pongamia pinnata using PISSRs (Pongamia Inter-Simple Sequence Repeats). Journal of Plant Genome Sciences. 1 (3): 54–67
+# Jiang Q, Yen SH, Stiller J, Edwards D, Scott PT and Gresshoff PM. (2012) Genetic, biochemical, and morphological diversity of the legume biofuel tree Pongamia pinnata. Journal of Plant Genome Sciences. 1 (3): 54-67
 # Lai K, Duran C, Berkman PJ, Lorenc MT, Stiller J, Manoli S, Hayden M, Forrest K, Fleury D, Baumann U, Zander M,  Mason A, Batley J, Edwards D. (2012) Single Nucleotide Polymorphism Discovery from Wheat Next Generation Sequence Data. [http://onlinelibrary.wiley.com/doi/10.1111/j.1467-7652.2012.00718.x/abstract Plant Biotechnology Journal. 10 (6): 743-749]
 # Hayward A, Vighnesh G, Delay G, Samian MR, Manoli SM, Stiller J, McKenzie M, Edwards D and Batley J. (2012) Second Generation Sequencing for Gene Discovery in the Brassicaceae. [http://onlinelibrary.wiley.com/doi/10.1111/j.1467-7652.2012.00719.x/abstract Plant Biotechnology Journal. 10 (6): 750-759]